Download Strand NGS 3.4 full license
Strand NGS (Formerly Avadis NGS) is an integrated platform that provides analysis, management and visualization tools for next-generation sequencing data. It supports extensive workflows for alignment, RNA-Seq, small RNA-Seq, DNA-Seq, Methyl-Seq, MeDIP-Seq, and ChIP-Seq experiments.
features of Strand NGS
Perform gene, exon and transcript level quantification. Identify novel events, differentially expressed genes, gene fusions and splice forms
Strand NGS allows detection of SNPs, InDels, CNVs and other SVs. Functional predictions can be made using SIFT, Polyphen2, LRT, MutationTaster and further annotated with information from dbSNP, COSMIC etc
Detect peaks using PICS and MACS. Identify TF regulation binding sites, affected genes and histone modification sites. Discover significant motifs and verify them against JASPAR.
Strand NGS supports quantification of small RNA species including miRNA, snRNA, snoRNA and scRNA. It also helps identify differentially expressed genes and their corresponding mRNA targets.
Strand NGS supports methylation detection, differential methylation analysis across samples/target regions, and biological interpretation on the affected gene list via GO, pathway analysis etc
Strand NGS provides support for pathway analysis, GO enrichment, GSEA, GSA and NLP derived interaction networks
The Server Edition provides centralized storage, scalable compute and enables collaborative analysis.
Download Strand NGS 3.4 full license (windows / linux / MacOS)
Download Strand NGS 3.4 for windows / linux / MacOS
install Strand NGS 3.4
see the readme file